PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020559001
Common NameGSBRNA2T00020559001, LOC106395238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 261aa    MW: 27128.5 Da    PI: 8.2945
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020559001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.92.2e-40351351100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasn++kll ++p ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +
  GSBRNA2T00020559001  35 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNISKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVN 124
                          7***********************998899************************************************************ PP

               DUF260  90 lkaelallkee 100
                          l+ae+++++++
  GSBRNA2T00020559001 125 LQAEVSYVQAH 135
                          *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.94234136IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3935133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSGGGNTLTS MGGSGCGGGS SGSGGGTSGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GSAYFAAVHK VFGASNISKL LLHIPVHRRS DAVVTICYEA QARIRDPIYG CVAHIFALQQ  120
QVVNLQAEVS YVQAHLASLE LPQPPPPPPP RPQSQPQLLF LTPPPLSITD LPASVSPLPS  180
TYDLASTFDH AASPSSWATQ QRRFVDPRHQ YGRSLPSSSA TLGLGGGNSD LEALAHELLH  240
RQGSPPPTAT DDSQSRTKSR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.143941e-128seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691204.10.0PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-120LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A078J4340.0A0A078J434_BRANA; BnaC04g56960D protein
STRINGBra040311.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-121LOB domain-containing protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]